Here are some links for you to explore the use of UpSet plots as an alternative to a venn diagram. https://caleydo.org/tools/upset/ https://cran.r-project.org/web/packages/UpSetR/vignettes/basic.usage.html Above the first graph shows 79 genes overlapping between reproductive and sterile maternal bias. In the second graph that overlap is only 73 as some of these genes also overlap with another category … Continue reading UpSetR: better than a venn diagram
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Confirmation of Differential or Allele-Specific Methylation
Here is a brief pipeline for confirming allele specific methylation (or differential meth with some modifications) in known genes (like qPCR for gene expression). The above protocol was specifically for confirming methylation in different alleles. However this could be adapted to confirm methylation levels in known genes between different samples. Also the TOPO closing says … Continue reading Confirmation of Differential or Allele-Specific Methylation
Integration of Rstudio and GitHub
There is a free course you can take online that shows you how to: Set up a GitHubMake citable DOI's to each repository Integrate Rstudio and push your code directly to GitHub through git I found this course extremely useful. It comes in three segments, addressing the above, each with an easy to follow video. … Continue reading Integration of Rstudio and GitHub
Social Epigenetics Lab 
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