You’ve got a paper accepted and now you need a reasonable bib file

My Zotero bib has over 7000 entries. I can't submit that to a journal! They usually only want it when the paper has been accepted. Zotero should be able to do this for you with bbt, but it never seems to work. Simplest way I found: Download the bib file from overleaf. Look in the … Continue reading You’ve got a paper accepted and now you need a reasonable bib file

A labscrum refresh

The original labscrum document https://sel.home.blog/wp-content/uploads/2022/03/b4c3c-labscrumguide.pdf. Overall I think these meetings have worked better than expected due mainly to your engagement with them. Below is a refresh of what each meeting should be. Sprint planning (first Monday) Tell us your goals for this sprint. This is not a todo list. Rather it is the high level things … Continue reading A labscrum refresh

If its a non-personal question about stats, can I ask you to use the discussion board

TLDR: Use the discussion board on blackboard, if it is not an issue that requires confidentiality. You've received this link because you emailed me a questions about statistics and R in BS1040/BS1070/MB1080 or BS2004 by email. As stated at the start of the course, its not productive for me to answer questions by email. Rather … Continue reading If its a non-personal question about stats, can I ask you to use the discussion board

Changing the number of authors displayed using natbib

It's often useful to truncate the number of authors displayed in bibliographies. Think of those endless genome papers. Equally journals can have rules about it. There are lots of questions about it in forums and after much searching I found an answer using our favorite bibtex style, natbib. This is taken from stackexchange. Basically you … Continue reading Changing the number of authors displayed using natbib

Outline of first year data analysis course

This outline is mainly for people who aren't first year undergrads at Leicester, but who might be interested in using this course to improve their data analysis or get a taste for R. There are mini lectures and associated practical sessions. The lectures slides might not make sense by themselves, but will give you an … Continue reading Outline of first year data analysis course

Going from a list of accession numbers to a formatted latex table

I just want to highlight two packages in R that really do something useful. mygene (https://bioconductor.org/packages/release/bioc/html/mygene.html) takes a list of accession numbers and gets back genbank records. This is something I'm always doing. There are probably lots of good ways of doing this. xtable (https://cran.r-project.org/web/packages/xtable/index.html) is a bit more unique. It can take an R … Continue reading Going from a list of accession numbers to a formatted latex table